PPT6104 / BIOINFORMATIC IN PLANT PATHOLOGY

Contents Of The Courses in a weekly Period

Hafta 
Subjects 
Sources 
1Publicly available gene banks, access to data at genebanks and evaluation11
2Comparison of DNA sequences partially or fully sequenced pathogens with genebank data11
3Data submission process to genebank (The National Center for Biotechnology Information-NCBI) 11
4Trimming of raw DNA sequence and sequence assembly (Steaden package; Pregap and Gap4) 11
5Trimming of raw DNA sequence and sequence assembly (Steaden package; Pregap and Gap4) 11
6Multi sequence alingments (Bioedit, Clustal W, Mega5)11
7Construction of phylogenetic trees (Why phylogenetic trees constructed?)11
8Construction of phylogenetic trees (Basic methods used for phylogenetic tree construction; PAUP)11
9Construction of phylogenetic trees (Basic methods used for phylogenetic tree construction; Mega5)11
10Construction of phylogenetic trees (Neighbour joining, parsimony, maximum likelyhood trees)11
11Construction of phylogenetic trees (Bootstrap analysis and interpretation the results)11
12Amino acid determination from DNA sequences 11
13Multi amino acid sequence alignments and phylogenetic analysis11
14Evaluaiton of phylogenetic research on different biological systems11